Scaffold Ga0115657_1020509

Overview

Basic Information

• Taxon OID: 3300008735
• Scaffold ID: Ga0115657_1020509
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 2.7-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5912
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 237

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032237	Metagenome / Metatranscriptome	180	Y
F077161	Metagenome / Metatranscriptome	117	N
F090238	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115657_10205096	F032237	N/A	MSEENRFIDKTTSLKTVERVKFSLKNFSKGSKIEISWAFNPEDSMHIDQFLETDPEKNNILTALRGFKKLCEDNLGVKILEDE*
Ga0115657_10205098	F090238	AGGAG	MRIHLEEGEEAHAEFHTHDGTTEIWLGGHLTIWGLFDTLVHEGLHEAIEDNTDQPTTEKQDHWVIQRLCF*
Ga0115657_10205099	F077161	GGA	MRNLTLPEIQARFDRHAKLHRFEVDKLFEKVKHKPFTEIQYRYLEIGIRHQFIYDIETSDFDPEQNFIICYVGILRDIVTEKIEHVQDSITKSDIKKAVSQSTFDFDKRLLTTLSHNMKQAHHVVGHYSTKFDNPYFRSRCLLTNQEDLIPGYGYQFYGDTWRMMKTTMKAKRNTLKNFIRQTTGNDEKTFVDLKYWYITHFKDHKLWKKSMDYIIDHCVKDVKMTYEGLKRAELFNNIQRAKA*