Scaffold Ga0115617_100118

Overview

Basic Information

• Taxon OID: 3300008733
• Scaffold ID: Ga0115617_100118
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 1, subject 763759525 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 83055
• Total Scaffold Genes: 147
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (45.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F083452	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115617_1001181	F058555	N/A	MKLVYLQQIKNIMETKVALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIEDCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKDIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKNLIDIGMQEISKSTIYRYISMFLDMCKKSISDLYEEVVKNNGVVNTKDNNNVTIGHIRASYKGSVLYILISTDYIINVFLGKKSAEMSKAG*
Ga0115617_10011819	F083452	N/A	MQGYWIIDMSGRVKIKSKDKDKKPKIDVFKVIENRFKNMNELRDLIDMDPRKGMVRIRDGAGFREVERGGCLHRNYLNLLEEELGAKLSIDLIDKYIKRK*
Ga0115617_10011824	F057001	AGG	MPIQVPRARANLMTNKELTKVQSEVKRASEKTLTGAVKAWCNLFKSGKEINEILKDNDIKVDKAIVPALVALAKEKETVIQLCKEILPRVNNTFCAYKEVEREYYDKQDQDKNVRSTVDKIESIAVLGTDHKRFGYNEPVEFDGGIYYEVFNGPDKRIVKCAIPIKRYTYNLIAKCITYYLTHPKNAR*