Scaffold Ga0103619_100294

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0103619_100294

Scaffold Ga0103619_100294

Overview

Basic Information
Taxon OID	3300008698 Open in IMG/M
Scaffold ID	Ga0103619_100294 Open in IMG/M
Source Dataset Name	Microbial communities of saline water collected from the North Sea in Germany - HE327_3b
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	Goettingen Genomics Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1234
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → North Sea → Microbial Communities Of Saline Water Collected From The North Sea In Germany

Source Dataset Sampling Location
Location Name	North Sea, Germany
Coordinates	Lat. (^o)	54.4223	Long. (^o)	7.6833	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F047922	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0103619_1002943	F047922	GAGG	MTPQEIVAHKNKWRMASYFVSHTHSDLRSEATQWCKDHCFQWRYDIKHFTDIYGDTVRFELEEDFNAFNEWYQERMYG*

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