Scaffold Ga0115658_1144135

Overview

Basic Information

• Taxon OID: 3300008629
• Scaffold ID: Ga0115658_1144135
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1244
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F016590	Metagenome	246	Y
F036918	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115658_11441351	F016590	N/A	PDTIRSTVFHATDHAGLAKLKKLEGGKKSISAFFSMMSRYMESGIATTGGVVAEMDADVLISASSDIMSEVDKTGRRWVEMSWFENAQRYGVGADFRKVEKDLTTLITGLVKKYIPKDKEIQQTKHFAKDAGAVFQIWSNFKHHLKGDGKILRLVIKDYFDGVEKIIKRHQKTMGSIFHGYAKSKRQTEDSWDEQIVNNIKVKTIHLIQPTQLKIDTADPDRTHPIDSYEFAKDKAEKLFGTVKEWNFSTDLEIYTREVVRKEIGK*
Ga0115658_11441352	F000659	GGA	MITFKQYLEEANSKYIVSKNPNDKKWYVMGHVGNNKWMPVSNGFKNKAQAQKWAKSQDKVDSAARGEISDV*
Ga0115658_11441353	F036918	GGAG	MYKMKTFKQFIKEDLTTNPFAIAGKPAWTESLSTMLFDLPREGIKDIKIPISPPIFRRIWPKPVRTKVFHLTDGGG