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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008629 Open in IMG/M |
| Scaffold ID | Ga0115658_1040599 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3056 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 200 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001594 | Metagenome / Metatranscriptome | 666 | Y |
| F007647 | Metagenome / Metatranscriptome | 347 | Y |
| F008755 | Metagenome / Metatranscriptome | 328 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0115658_10405992 | F007647 | AGGAGG | LDQAKVNNVVNSFFNSLKSNEDKMLETGLTHNTTVELLHQATLQLVQENPKRFEQYVKFFEFGCMYLQDESDEIPEVENIGR* |
| Ga0115658_10405993 | F001594 | GGAG | MEKKLTKDEYLESLDPDNLNLEKKDLINFCYKCIDEWKKNKVGNFKYIVAMELMIGAVRITPEEVMKTVWKKILVWFWDLQYKNALAENDGMLRRLREIGSS* |
| Ga0115658_10405994 | F008755 | GGAG | MNKSRVARDLWRKVFNDNLIDLKDSDARKQVVREFLNDPVNKKSGWKAKDARFFRLGFNKVAKENNFNVMNVGVTPTPSRSKTSKGSMNINVKSKQKNPSPLTTEPTSSIKPPTEQEKKFGALPQTPQLENQQAQATYYSAQAVGQIFETVFNIVFTRLGAEGLTQNERIALGEAWTPIFNEYLTGENSKWIMPAVVTMPIILTRIVQVQKIKKEKELAERYGMDEVPKEPQPKKKSAWENMSHGEKTNKG* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |