Scaffold Ga0115658_1037517

Overview

Basic Information

• Taxon OID: 3300008629
• Scaffold ID: Ga0115658_1037517
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3230
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F084350	Metagenome	112	N
F092212	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115658_10375171	F092212	N/A	DLPLLYTFGWGTPLFLAHRNLYDFDAAEGDKIEIWEGAASSWTDILGNSEWYDANYERGTIHLRGYIFSILRKNRVRVTYRYGGEGFGGDTTIPGDIEDCIVKMTAIELVNTSLRMDRLPMGGTGIDLQAVKARWIEDIEKCIDNRREWFIIP*
Ga0115658_10375173	F084350	AGGAG	MAIATYDVIDDIISMFKTKWNTSSGGQIPRIERVWDEKTIGFGDMGIKKGIIIIEPMNESIKYFSLGGTNHLHGIDVTLDVRSYQSLDRHVELVKEVARIIKDQITRTGAVDIRIMGTEPLSRLYRNMFRHMIRVQYRKIDP*