Scaffold Ga0115658_1007307

Overview

Basic Information

• Taxon OID: 3300008629
• Scaffold ID: Ga0115658_1007307
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10270
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035724	Metagenome	171	Y
F039110	Metagenome / Metatranscriptome	164	Y
F059474	Metagenome / Metatranscriptome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115658_100730711	F059474	GGA	MAFHAIDRNETQKVVSIDDPAINLDKSNITAYSDSQDLKHLSFKEGEEPTVFHLGTITYMKFSEIKDRHIKFDLGDDGQEIKTNLFGLTADALRYSLKKADNLPFPIKIEKGRLSNTTMDKLARLGIVEELGNIALNLNGFGDKDEKK*
Ga0115658_100730715	F039110	N/A	MGKAVAKKAVAKKATARPKLKALRDGSHGIDGQVYTYQKGDVITLSKKAHLKSMKDLPCLEEI*
Ga0115658_10073078	F035724	GAGG	MIFHYPTSAAPTTTLTFTNNPESPYERAVIKHNTQVQMEDGTFFVYSRAVTNYRYSITVVLNSESERDALESFYDSTVNGSEKTFSYTDPYSDVYTVRFEDTMRISEIFKDRMYRATFNLIQTT*