Scaffold Ga0115658_1007151

Overview

Basic Information

• Taxon OID: 3300008629
• Scaffold ID: Ga0115658_1007151
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10443
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (64.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023718	Metagenome / Metatranscriptome	209	Y
F034338	Metagenome / Metatranscriptome	175	Y
F045361	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115658_100715122	F023718	AGGA	MKEKIDLSLNRSLEELISSYWEAVVSTTNYENEGIESSDFYVLENYLSDMGVL*
Ga0115658_100715129	F045361	GAG	MMRVVMMVGMVVGAYVAGMNGITHVEVMEMVETAMTYVEGMIEYAESYRGEVSSVVESVNEVVEEVL*
Ga0115658_10071514	F034338	GGA	MTNYDIDAIKRTERFERFDHAINCMDISTISMMAFERIAKKREVSLTRLLETLLLDALDRELSRDNPQLEFPFNEGNYG*