Scaffold Ga0115658_1002141

Overview

Basic Information

• Taxon OID: 3300008629
• Scaffold ID: Ga0115658_1002141
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25421
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (64.10%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F009237	Metagenome / Metatranscriptome	321	Y
F011337	Metagenome	292	Y
F016590	Metagenome	246	Y
F029553	Metagenome / Metatranscriptome	188	Y
F055182	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115658_100214112	F009237	N/A	MNKRLTKLKSLIDDGSVPTILEVRSKPKDYSYEDVVALDYGFVQNLYMGSGQFEKWFTYTGPKPIKLNDLIINPNEMIEILLDYYGIS*
Ga0115658_100214122	F029553	GGAG	MALTIEAIQERKVALEGDLVKLRDTISQLDAKRQELVGNMNALSGAVQQCDQFLVDIAEQEEPKIKKEK*
Ga0115658_100214128	F016590	GGAG	MYKMKTFKQYLREFAMQSPSDLVFDVPSGESGSLKIPISGPMFKRIWPDTIRSTVFHATDLKGLERLKKLEGGKNTISAFFSMMSRYMEKGIATEGGLVVEMDADVLISASSDIMSEVDKQGRRWVEMSWFANAQRYGVGPDFRKVEGDLSKLIEGLVTKHIPFGKSQTIQQTKHFAKDSGRYFDIWGNMKHHLKGDGKILRVVIKDYFDGVEKIIKKHKKVMESIFYGYAKSKRQTEDSWDEQLVNNIKIKKIHVLEVKSYEDDEYVVHDDVSSVGNWPIVDWGSSIELEVYTRQVVQKEIGK*
Ga0115658_100214129	F000659	N/A	MKTFKTYLKEVNSKYIVAKNPSDKKWYVMGHVGSNKWMPVSNGFKNKAQAQKWAKSQDTVDIAARGEMGDV*
Ga0115658_100214138	F011337	AGG	MKTFKHFLLEIGVDPFKIAGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDFDGLGKLKGMQGGKRSISAFFNIDDIVIQTGIKSEGGYVIEMEADVLVASQDDISSQPDKTGRRWVTLSSLMNKPTDSDPGLGGGAKLKGMEKDIEKMLIKIIVDHSDITPEPNINKAWGYLGKSVGGKEKSLIIKDYIDGMEKTMKKHSKVLGTLLTAYTKKRIQEPDPDSGDKPMWDELVVNNFKIQKIHVSPEFSPDFAELEKGEGGERMYTFANKDKDIEGFPFELYYEVGDMVDYINRTVAKIKL*
Ga0115658_10021416	F055182	N/A	MPTYQYKCKNCEFEFEDTFKIDDRNIPIENPQKYGSCNSEGGESGTPCVLQIVPQFPSPISMRDSFRRHTSDGWKDRLKEIKRQNPGSNLDT*