Scaffold Ga0115652_1010341

Overview

Basic Information

• Taxon OID: 3300008624
• Scaffold ID: Ga0115652_1010341
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4415
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aestuariivita → unclassified Aestuariivita → Aestuariivita sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020384	Metagenome / Metatranscriptome	224	N
F024807	Metagenome	204	N
F029468	Metagenome / Metatranscriptome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115652_10103412	F020384	N/A	MRHKKFHSYQKSLQKLRNIVSETLRSSGQGRQIEFDNQMRRAIRHIQIIKRNAPPDANGDLAMVEAYKLYDRLQRLSEYPTFFVDNTRKNPRRVASDRGSDYTHAARPASIKWDAAAMMAVPMSGEDRNWWRPPPRPAPVKHFTQEELENEYPAFTLRKERKDAT*
Ga0115652_10103413	F024807	GAGG	MTKRVMPFNLVYHDRDQQLTLALHDNPVTLTRDEVDALVFHLDSFLFDMDRERKPQPSAEGADTHAEAHGEMLMAQFDDDPNPYHGDYSED*
Ga0115652_10103414	F029468	N/A	MSPLRRIKREIGHGTTSTNGVKFEEMTMKVRLKKQAEKDFDKTDVEEKQLALNAACKDFVSEFIDCEGDVFYSTYNKAANSIWQYEQSVKNAAMTKVGPEWDHKAGVVGKWRYPHLRKDDD*