Scaffold Ga0115652_1004243

Overview

Basic Information

• Taxon OID: 3300008624
• Scaffold ID: Ga0115652_1004243
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8579
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F011337	Metagenome	292	Y
F013815	Metagenome / Metatranscriptome	268	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115652_100424311	F000245	N/A	MKTFKEYSLQDKLDKYVSDEIKRRKLARFPVNATDDYKMKKGKPTFKFPSPTGEMMIHVWLRPMAKPAKSHTKAFNYQLEDK*
Ga0115652_10042434	F013815	GGAG	MYSIQYEKTLPPWYIGTDVIQAETSEDAVKEFYKHHNSFEDRIRSVREMQNTYHSQIM*
Ga0115652_10042437	F011337	AGG	MLRFKQYIAEIGVDPFKIVGKPAWTESLSTMLFDLPRAGIKDIKIPLSPAIMRRIWPKPVRTTVFHLTDYTGLGKLKKMQGGKRSVSAFFYIDPIVIETGIKSEGGYIAEMEADVLVASQDDISSQPDKTGRRWVTLSSLMNKPTDADPGLGGGAKLKGMEKDISGMLVNIIVDHSDITPLPNFNKAWNYLGKSTGGKEKSLIIKDYLDGMEKVMKKHSKVLGTLLTDYTKKRIQKPDPDSGDLPMWDELVVNNFTIKKVHIGPEFGPDWEDDEDIDGFPFELYQDTGDMADYITRKSQSARL*