Scaffold Ga0115652_1001670

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115652_1001670

Scaffold Ga0115652_1001670

Overview

Basic Information
Taxon OID	3300008624 Open in IMG/M
Scaffold ID	Ga0115652_1001670 Open in IMG/M
Source Dataset Name	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Georgia Genomics Facility
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17067
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (82.14%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location Name	Cariaco Basin, Venezuela
Coordinates	Lat. (^o)	10.5	Long. (^o)	-64.66	Alt. (m)		Depth (m)	200
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007139	Metagenome / Metatranscriptome	357	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115652_100167020	F007139	AGGA	MVTKGIAKYVYLDSTEKFNGEDTGKYTLTVAVDDKEAKALESKGVKVRTIKTEDGGSYRARKFSTKYPLSFDMVKTADGEAIGHDFGAESEVQVLWKEGNEHPQHGVATYLTAVKVLKRTEGYRSADEEANEFFA*

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