Scaffold Ga0115652_1001387

Overview

Basic Information

• Taxon OID: 3300008624
• Scaffold ID: Ga0115652_1001387
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19477
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (64.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030873	Metagenome	184	N
F056667	Metagenome	137	N
F068116	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115652_100138714	F068116	AGG	MRTQISDYELITFFNNLKEIIQAQKELNHVLAKRITNLENRLEKKESEVINVVQEK*
Ga0115652_100138715	F030873	GAGG	MLFKRNDKIAIVVKPKTHEGLTNEKDYFTRYGEMRKDSKFLVSKNIITFWDTQKDSFRSFNLSDVVSITNLSRTPLEINKKEQEKKEREKMKGYNCLSCKTRLRHDYLNKWDSNYCGDC*
Ga0115652_100138722	F056667	AGG	MMDLDTIKDLNKKAGLNAKENKIMPLVFNSVDMDKLKHNDIEPIRNMPDLGNSIPKGWNRFDLGKIKNDFTYNYKIYSDDADGSGAFFVDQGMGSDNEPAMTIPQFIKSLSELWNKNKKLGYGIVETGQFQVKIGVFKLV*