Scaffold Ga0115652_1001090

Overview

Basic Information

• Taxon OID: 3300008624
• Scaffold ID: Ga0115652_1001090
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23429
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (73.81%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004418	Metagenome / Metatranscriptome	439	Y
F015611	Metagenome / Metatranscriptome	253	Y
F062152	Metagenome / Metatranscriptome	131	Y
F076483	Metagenome	118	Y
F084713	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115652_100109020	F084713	GGAG	MPKLMIEKIKDKKVYGKDMYKVVKLIDSHRLSLLETQFDEPSMLRYIQSLPNTYNYEIKNKTGV*
Ga0115652_100109022	F062152	GAGG	MAGAHYTNDLVNHINKLNQDTRDRGANGFLTNDPDHWAEYGVYTIGDFQLYLEREHERNMYKSQLGE*
Ga0115652_100109023	F076483	GGAG	MQMISKTKLGQIFRTEADRITKIRTLQTHLNDLTLDIPLMRRKVTELNMRWILRNIKVNNSEHININKIIKLTKEVI*
Ga0115652_100109029	F004418	N/A	MKKIINWLKDDWKNNRFRLFCETVGSVCFILIYVLMAWYGESVSILTIFLIQIVGSSLHIINAWLRNSVNLIALNCIVIAIALFGLAKMALSI*
Ga0115652_100109035	F015611	AGG	METTYKEFMEAKVKSWKDMKDRNVLRAADKFKKKMRKDNVLGYTLAHGEFVIFRNEKEWDDSVKHAKDMKWIRVE*