Scaffold Ga0115652_1000659

Overview

Basic Information

• Taxon OID: 3300008624
• Scaffold ID: Ga0115652_1000659
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 32321
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (72.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010942	Metagenome / Metatranscriptome	297	Y
F012162	Metagenome / Metatranscriptome	283	Y
F092696	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115652_10006591	F010942	N/A	EKKFIAIEKDIEHLNYVINELEKECEFVKKHFTTKNNERLDDVKVLHGRIESHQKTDLEFHENVRKKISEKFDALDERIRQLDKWKWATWGALMVVGALIGYSFPISIK*
Ga0115652_100065910	F092696	N/A	MITVFLETGEPLEHKFTLSFDNAKNCAEFKKVVDVGVSFFRLANGGEINYSGSCKKVVASTTIKGSL*
Ga0115652_10006594	F012162	AGGAGG	MLLSEQQTKFYLDEMINHYGKKENDSQQLSWNRSEADAKKKAFQDMKIVLFGDDNNENKREKIT*