Scaffold Ga0115652_1000159

Overview

Basic Information

• Taxon OID: 3300008624
• Scaffold ID: Ga0115652_1000159
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62294
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F010167	Metagenome	307	Y
F044544	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115652_100015914	F044544	AGGAG	MSNFVVEHCALKACQHWRIGNNCTKHNKSIADHLEYVINLHNSDVCEVRRQANLYRLDNLLEDTNE*
Ga0115652_100015955	F010167	GGAGG	MLFAHTSLVQEGEAALFYRFDRKLNGYMIAGVFINDTVEAKLNFAKIWTYFVSEIVQADDIYCSIPLEGQHSMFNNYLTYHSDSDNLKIYKVDSFLKKQYSNYEKHLERAGSST*
Ga0115652_100015963	F002078	GGAG	MDIASMFAGQGWFEIAGQVVLIFTAITGALPDKFVQKIPILSTVWPIFNWLAGNIFNNINHPKGMAAVAEVEKEIDAAKAKVRDRAGMPDVLDGM*