Scaffold Ga0111059_100006

Overview

Basic Information

• Taxon OID: 3300008556
• Scaffold ID: Ga0111059_100006
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159591683 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 236317
• Total Scaffold Genes: 221
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 197 (89.14%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F105379	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111059_100006100	F089057	GGAGG	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDANDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIINKDIDKLASLCTGYLAITKDEVLVKDLMNKSATMAFQYMSEEDIHDVVDDINSRSVLARYLSRM*
Ga0111059_100006136	F095631	GGAGG	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNTLQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVSKYCNYTYIDSSTIRVMFDNASYLPTANTEVTVNLYTCQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASIAYQASEDELKAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYLSDRDTYFGDISIMQNIQSDIGLVHKDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDHIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIVDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIITYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0111059_10000614	F092232	GGAGG	MNTQAKFIADYNDKNRPKFNDIFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEETFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEETLRMAMFSVYLFDHKVTLFEYYLARFGWYETLNKFNFEDVIKISDHDIDDPEYYTFAIANSHMKSPFYISAVKSFVDNDRILQSFIASFAKSIASYATKKTTMDQLYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDNRDPEAVAFDAQLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0111059_100006160	F081455	AGGAG	METTNTENKNLFQQLARLGFDVNESLLELEKEYAPVEEIGMQNVDIIDAAEEAIQQPLANTDSSIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILGNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDVDHHLISSAKK*
Ga0111059_100006161	F080166	N/A	MEVTFNNTIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGTNRQNMMR*
Ga0111059_100006164	F099453	AGGAGG	MNRFDIIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSLGLVVIPELYQARLANLTNEVYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYIDRLKTHYVFMVCENRTYINSANLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA*
Ga0111059_100006183	F092229	AGGAG	MNEEYRFKHIPEVVLRNVKFIRENNIDIGTGDDVLDCMMEINPVLRQRIYDDYDLAKDVAERRFNSTIEDLDLTTILQKCTTRPYIAILNNIYFRYFNSKLIDDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFIKYGLKTNSSRNLYTRMDNNLSLYYYMEDYLDEYVKNGKVTYGSQEYSTIKEFKYLPLMNVLTQLTRSNPSGYILNHKLELVKENK*
Ga0111059_100006211	F105379	AGGAGG	MVIHFPLSQSDIESLLSISKLLKCDKILYDRSYVNPIIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLGKITQLEPSKDNPEIAIHRPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDDYNELMAGSASTGAFRINVGGYMIDIPKSAMPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0111059_100006217	F095629	N/A	MEVIKMRELIICACLFGCFGVANAAAPVEQPKEVKVVHNDDSVALHKKIYKLEQRIERLEKLLAEKEGK*
Ga0111059_10000660	F099452	AGAAGG	MDKTYAELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSVNVFTLYKDIINLDDVSLLAELRHTEWYRDWFTNDKRNSDLIDLSRFNFRVLERFEKEEYLRDAEHYDFEGISEVDSYDLFDTLREDKDIELFKLAAENILINHGFFNSTDYNLYEVPDEYMSNQEVCLYMCLLNTDNLDFMDKKTFDSTLLYNIVKDRICGSIYFNIFDSLSEDTRTRAR*