Scaffold Ga0111034_1179523

Overview

Basic Information

• Taxon OID: 3300008517
• Scaffold ID: Ga0111034_1179523
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2339
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015275	Metagenome / Metatranscriptome	256	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111034_11795233	F015275	AGG	MTKAKFGFIDPGAIMGVVVSLIILAVGAFAFFVTVSNIPGSAAPHGNSTAAYNQTYNAIVNTSITGDSVFSIVGVVLIVGAIMSIVGIVYNYVK*
Ga0111034_11795234	F015275	AGGA	MSSKGDTMKAKFGFIDPGAIMGVVVSLIILAVGVFAFFVTLANIPDTGSTQIRSAINNTSSTGNSVFNIIGVVLIIGAIMSIVGLVYNYVK*
Ga0111034_11795235	F015275	N/A	MEENMTKAKFGFIDPGAIMGVVVSLIILAVGVFAFFVTIQNIPAGNAQQTSAIANISDTGDSVFNIVGVVLIIGAIMSIVGLVYNYVK*