Scaffold Ga0111034_1012811

Overview

Basic Information

• Taxon OID: 3300008517
• Scaffold ID: Ga0111034_1012811
• Source Dataset Name: Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 175 cmbsf. Combined Assembly of Gp0128389 and Gp0131431 MM4PM4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Aarhus University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2017
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location

• Location Name: Aarhus Bay station M5
• Coordinates
  • Lat. (^o): 56.10555
  • Long. (^o): 10.463333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F059342	Metagenome / Metatranscriptome	134	N
F067108	Metagenome / Metatranscriptome	126	Y
F103885	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111034_10128112	F067108	N/A	MSKIKKVDENVDFSVFTKFTKDLGLFQVNASVWSMVSQDCTHSHDISDIELGFSINNKPCKYLGFQELYEKLYGKSTFNQFRADLTTEFEEAYFKQSPYKNK*
Ga0111034_10128113	F001217	N/A	MSATKFNGFEKYFIQTALKHAIEQAELDVLAAESDGKRSIYAPGYFSMVGNEIIHKVNRMTLKRYQD*
Ga0111034_10128114	F059342	N/A	MSTTKYNGYTNFNTWRVFHDTLSDIGFESKVTADELKEISLGIVLSNFEMERGSHLVEEYAKLFIELADFEDIADFINYYIK*
Ga0111034_10128116	F103885	N/A	METLLKKIKPKYIKKIKSSDYKYSASKILAKLESASFYGDLTISELHSIYGMCNIESVRVSAWDIRFGDN