NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0111033_1266823

Scaffold Ga0111033_1266823


Overview

Basic Information
Taxon OID3300008516 Open in IMG/M
Scaffold IDGa0111033_1266823 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Aarhus Bay station M5, Denmark - 125 cmbsf. Combined Assembly of MM3PM3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterAarhus University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2141
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From Aarhus Bay Station M5, Denmark

Source Dataset Sampling Location
Location NameAarhus Bay station M5
CoordinatesLat. (o)56.10555Long. (o)10.463333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044529Metagenome / Metatranscriptome154N
F045130Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0111033_12668231F045130GGAGGMGMPKFLEDYTTVDELISKMNKQYPECRLVAEMVDNGDDWVIFKSSFYENKEDTEPKATGYARQTKADHNSWFEMASTKANGRCLRVVFSESTTAEEM
Ga0111033_12668232F044529GGAMLIQEIIYLGFVVYGVISLLMTMAYVSLKLDDKRLREKKKDLYDVTDFESRLKEGEILNWCNLFTGTHHFDAPADDGNFVCLKCWTYEGYEMEEV*

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