Scaffold Ga0115197_1001087

Overview

Basic Information

• Taxon OID: 3300008490
• Scaffold ID: Ga0115197_1001087
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 638754422 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21176
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (67.74%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103430	Metagenome	101	N
F105376	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115197_100108729	F103430	GAGG	MEQITIKAFIGSNNKTKKLEVDKIISTVNANHEAFTLDYPVIGCWRGEVEETAVLYLSDERQKVMNTLNKLKEVLGQEAIAYQIENDLQLI*
Ga0115197_10010875	F105376	N/A	MNEKSEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIAQANVTQAQLAKHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQSQVKRR*