NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0111007_100140

Scaffold Ga0111007_100140


Overview

Basic Information
Taxon OID3300008489 Open in IMG/M
Scaffold IDGa0111007_100140 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 764811490 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44285
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (11.90%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059076Metagenome134N
F063777Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0111007_10014015F059076N/AMTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDNVNGDYIRKFDTGIDYKKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGNLVNGTWVITLLVGKRDAVNFTEIKFDQNGQAEGIGPSNTTYTTQLQNFLKKLE*
Ga0111007_10014042F063777N/AFLLIFGILFLIGWGIYSGINSIISAVKEDFFGIKEKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAQSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEIAISE*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.