NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115173_1000285

Scaffold Ga0115173_1000285


Overview

Basic Information
Taxon OID3300008480 Open in IMG/M
Scaffold IDGa0115173_1000285 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 160158126 reassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36521
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (73.81%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033081Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0115173_100028514F033081AGGMAWLFRRAMPRDTRPTFVWPKLVATIEDARYLDRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGVAGVLLIGDFTNYTKQQKALHSLKATRCEAYNTLLLFALWEEQAFRSGSERWSWCERVRASVCFGLAHVVNIWYSFAAGTALSMTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVTAAVYLAINIAKML*

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