Scaffold Ga0115371_10957661

Overview

Basic Information

• Taxon OID: 3300008470
• Scaffold ID: Ga0115371_10957661
• Source Dataset Name: Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5082
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Sediment Core Microbial Communities From Adelie Basin, Antarctica

Source Dataset Sampling Location

• Location Name: Adelie Basin, Antarctica
• Coordinates
  • Lat. (^o): -66.314
  • Long. (^o): 140.425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033811	Metagenome / Metatranscriptome	176	N
F053982	Metagenome	140	N
F054452	Metagenome / Metatranscriptome	140	N
F061389	Metagenome / Metatranscriptome	132	Y
F066285	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115371_1095766111	F066285	N/A	MNKKSWNVVYFNRPDVHKNLVWSDGKRCFDGFLGSDNSVYRKTSGTPIDEPNAVYWIERHLCMSDVQK*
Ga0115371_1095766112	F061389	N/A	MTAILQKSFMWMTPGTVFILKTHEDREDIEIFLCEDPDEEGNEFWLSKGFVLGEFESDYKPLCWTEDLFLNV*
Ga0115371_1095766113	F033811	N/A	METNIAQAFIEAIDYSHVKHIIRSNKSIKAHWGGVTPSIADLKRVIKNMWARVSRHESAEDCVNGIVMIKDGKKVRVDFLYLSYSSQMEESSEHSEEDCLRDSEREIESS*
Ga0115371_109576613	F053982	N/A	MKKKQRMHYYGVLVTYNPYDDTWYSFYKDDLTKYLTERDSVDLGKGKDALSAMNDYLSKKITSAFS*
Ga0115371_109576619	F054452	N/A	MTDDLKMSLLKELMFGLDVWNHEHHEEIMFLHDFGFVKVYDEDLQFTATTEDGVLELKRLIKLYFVFLN*