NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115371_10579720

Scaffold Ga0115371_10579720


Overview

Basic Information
Taxon OID3300008470 Open in IMG/M
Scaffold IDGa0115371_10579720 Open in IMG/M
Source Dataset NameSediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3790
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Sediment Core Microbial Communities From Adelie Basin, Antarctica

Source Dataset Sampling Location
Location NameAdelie Basin, Antarctica
CoordinatesLat. (o)-66.314Long. (o)140.425Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013783Metagenome / Metatranscriptome268Y
F015210Metagenome / Metatranscriptome256Y
F048642Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0115371_105797202F015210AGGAMKRNDITIFDVDDTLVVTRSKIKVHNPKTGYEIELTPQEFNTFKTRPNDKMDFSDFQSIDILKAGKIIEWVFAILKRTIAKGKPVGIITARDDSSLIQQFLSHNGININPNYIFAINDPALGLKGSTAAKKKEAFRKFIDMGFNNFTFFDDDRENINIANSLNREPGITMKAKLIKQKWIPKFDDFKQK*
Ga0115371_105797204F013783N/ALIIEGITFKLALEFITFLKKNYITSTSIKVDFFDREKHQYIDFADVAAMKAYYNTNYKPLDNCNLGDLVSIQFFLATSELYDFTTEFKALDVTANLKLESGSAYDRQRNAGRKILIDRQVQLIKNAVTDYVKYYSQLKYIYITGIYSPCYAVPGWSENTWYLKSFREAFTSSKNTSEFPYSDVRIEQFPPN*
Ga0115371_105797205F048642N/AMATSFNLQEYILFRVPLKRELSNAEVDTNFQMVANPWVTTRVYEIGNIVYQPVIVDDVATTGEDQLLAWWRANTRTTQGVFDTSQWDMVGGLGTGGDITVQGANSFGKINVNSTTAMSSPQSGSDALVTSTTPNDTVNFIAGDGMQLQYDLTTKSIKIVNTLASNPGEINTASNIGSGASVQSVFKQKTGVNLEFRGFNATNTGSGS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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