Scaffold Ga0115371_10418155

Overview

Basic Information

• Taxon OID: 3300008470
• Scaffold ID: Ga0115371_10418155
• Source Dataset Name: Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8179
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Sediment Core Microbial Communities From Adelie Basin, Antarctica

Source Dataset Sampling Location

• Location Name: Adelie Basin, Antarctica
• Coordinates
  • Lat. (^o): -66.314
  • Long. (^o): 140.425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027866	Metagenome / Metatranscriptome	193	Y
F037683	Metagenome	167	Y
F066839	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115371_1041815510	F066839	GGA	MIRVKIQYRDMTEKQCKKFWLDYPEEDCKGRKYTDPDILDAVWEDWNNGSGRECTLFKKLEVRSMMVGDYVSILRPTVASVWHECLAFGWRIDVPWEEVLGDAPKKDWSDISKEDVEKALINKLEQQRCGKRI*
Ga0115371_1041815511	F027866	N/A	MKTYATYNARNAVKAAQVTNHIKAGKKVGLTHAEAKAEAYRLYQIKAGQAIVLKELIARLGS*
Ga0115371_1041815515	F037683	GGAGG	MEHDKVMIERIKIDVAEWMTTHGQIQMGEESAPDVLKVIDESVERTHRIREDWMLPDRC*