Scaffold Ga0115371_10260800

Overview

Basic Information

• Taxon OID: 3300008470
• Scaffold ID: Ga0115371_10260800
• Source Dataset Name: Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7058
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (15.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Sediment Core Microbial Communities From Adelie Basin, Antarctica

Source Dataset Sampling Location

• Location Name: Adelie Basin, Antarctica
• Coordinates
  • Lat. (^o): -66.314
  • Long. (^o): 140.425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F052198	Metagenome	143	Y
F067108	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115371_102608004	F067108	N/A	MSKKIIKVEENVDFSVFTKFTKDLGLFQVTARVWTMVSTPSPDGTFNHDVSDIELDFSMNNKQCKHVGFKELYEKLYGVDTFNQFYVDLSTEFEKAYFKNTPYKTK*
Ga0115371_102608005	F001217	N/A	MSRTKFNGFEKYFITTALKHAIEEAENDIKEMEEDGRRSIYAQGYFEMVGKELIAKVHDMTLKRDQ*
Ga0115371_102608008	F052198	GGAG	MNKEELQAKVNELKLTLGSLELNAKTVNDDYKIAKQKLEDINKPIITKNLLEQIQYVINESIRNSSLSSVDSYDVDFEIDYNNSLALGSIEFNDADQLSEEIADGIENIFNIIEE*