Scaffold Ga0115336_142987

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115336_142987

Scaffold Ga0115336_142987

Overview

Basic Information
Taxon OID	3300008464 Open in IMG/M
Scaffold ID	Ga0115336_142987 Open in IMG/M
Source Dataset Name	Deep sea sediment microbial communities from the Gulf of Mexico ? treatment with crude oil and Corexit
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Texas, Austin
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1278
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Sediment → Deep Sea Sediment Microbial Communities From The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Gulf of Mexico
Coordinates	Lat. (^o)	27.0	Long. (^o)	-88.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074900	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115336_1429872	F074900	AGGAG	MAARIVNMANFSEEEMLCATVEEARATLSAMVERFELQGYNVDEQHSPDEDYLYPQYAVSDDSDGWIGTYTILPR*

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