Scaffold Ga0114880_1170127

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1170127
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 763
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F062749	Metagenome	130	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_11701271	F041191	AGGA	MAKKMKLLWKPTKLTCEFVISDFAKSEGVQKVIGFSRGWHHWNSIRLGIRKEENYCVLYFYAYIKGQRIIQRIGRYQIGELVKVRLHWGHYIECKANDGYAFRVAPKFSFPIGYMLYPYAEKDGVEGVEVPFDIEIINLKVS*
Ga0114880_11701272	F062749	N/A	MKTKPSLILWAVSALFMSFWAIKFAMTGVFFGNSELLTFSISFCASLTSAVCGAGFMQQWLKK*
Ga0114880_11701273	F102493	N/A	TLHWEFEETDRESGIRGGWVLTDITNGKTPVHLSPKLEQLLNEELDPENF*