Scaffold Ga0114880_1064868

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1064868
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1498
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cholerae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001805	Metagenome / Metatranscriptome	631	Y
F014238	Metagenome	264	N
F028786	Metagenome / Metatranscriptome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10648681	F014238	N/A	VVIRYDDPVLEVVAQNDTSINAYGLLEEVRSTILAQTADATEQATNFVNYRGTPKVSLEEVTVNLAHSDMTNTVRDNLLGVSMDTLLYLDNIPVGLIPEGYNEGFVEGWTWTLGRNNLELTMSVSNSIYSTLDVQWEDYNSVIQWQNLDNATRWLDVI*
Ga0114880_10648683	F001805	N/A	MTMATEKIIVQVGEEITELKGADKEAFIADRQATQDAQALLEAEYKAKQEARENAIKKLAEVAGLTKEELDAIL*
Ga0114880_10648684	F028786	AGAAG	MQSFNYKQLSLAAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNV