Scaffold Ga0114880_1045656

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1045656
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1877
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025487	Metagenome	201	Y
F067537	Metagenome / Metatranscriptome	125	N
F087066	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10456561	F025487	N/A	TVALIPEQGWTQVRQVIVTTLVDNMPGFVLEKLTGTSDGFDRAEEILYDYYQLPELANELIVDAFKIMGATSCLELLSSLNFIEDELQTMQQQ*
Ga0114880_10456562	F067537	N/A	MTTKRQFDYKIGDRVAERPKPHGIYTNNQQTRERISQYRSQRYGEVVGINYKNNSRGASQKFLLVRWDHLPSPTEHATARICPVSALERLTKEVLVPGE*
Ga0114880_10456564	F087066	GAGG	MTENQIQFLRGCCATILAFAATGLIAAIFLSPDEPKNNSKFEVIDQYEGCSVIRYTDPTTRWHYFLKCS*