Scaffold Ga0114880_1041240

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1041240
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2002
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10412402	F009004	N/A	MKTEFNKVIDFLEVQQKENKHSSNQLHLIIQTLCTFLDDEQLKEVENLFNLKK*
Ga0114880_10412403	F034772	N/A	MKNLINYFTPRTQEHKSFLRHFLGTLMAFIVLGGMFYCLMYLKAL*
Ga0114880_10412404	F009958	N/A	MENRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDWDEVSEYAFIELDVEISQKWETETDDNLQPHVLGVRILEDVRLEMQEAINSDLVHYNFWEWKTSNDDSNYTFYYEL*
Ga0114880_10412405	F006463	N/A	MTSGTIYEQMDWWQRQWRGSFDLGLYLEICRIKKNEQIKYKEMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK*