Scaffold Ga0114880_1025338

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1025338
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2710
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028436	Metagenome / Metatranscriptome	191	Y
F058945	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10253381	F028436	N/A	EGLSKLQRERVVKEVLEKKGVNPKAQRLILKDLEDISEESVNTWLDDNGDLFGLTKEPAVTEEQEVNRAALRQQDILTQGSLTPDRAEDLEAKISNAQSAEEILSILRTQ*
Ga0114880_10253384	F058945	AGGGGG	MECDHKSKVLDWAYELKDGQMNQYVSLYGCTECDATSPKPFVSKEKVYTTDHSNCDTNPCFGCKAKGLQLSPGDANGRAAMPKRKWEGELKRYKEARRQGIQPAGTTMAKIIAAEKASENLGRAYNAEKDPNAKTINKKTASAMNQLKKAGI*