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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008450 Open in IMG/M |
| Scaffold ID | Ga0114880_1025252 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2715 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Western Lake Erie | |||||||
| Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F024551 | Metagenome | 205 | Y |
| F042864 | Metagenome | 157 | Y |
| F071224 | Metagenome | 122 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114880_10252525 | F042864 | N/A | MSTPIKPKAELVADKAMQELLKRRVVDFRQAASVKDKDGYVKGIGSYALYGIDHARGQLVVLASEPTAGDFNKYVTAKAKADVCALFDQVVEYRDAGTAKSPKVTILCWHLA* |
| Ga0114880_10252526 | F071224 | N/A | MAEYAARRLQAILPQIAALNAAGKTQADAAAALDTTVCTLRQWLDITGTTWVNLKKRGPYRRQK* |
| Ga0114880_10252527 | F024551 | N/A | MLIVKPDSLPRLWWLFPWSVCRQLHKNAVAIRELSDNQSTTITNQANILGRYMDENRDLKAEVVRLTHSREHWINKYDQAYAVAMHNEKVIREMEERSR* |
| Ga0114880_10252529 | F000957 | N/A | MSSFKHLDGMVALLSEIYHINERIMCGDICSAKTAIQSDRMKKLLNHYHEALSEDGASKISLQAYAAAGGWVGITYSYELDGFEVAGSQVPRRV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |