Scaffold Ga0114880_1025240

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1025240
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2716
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F007260	Metagenome / Metatranscriptome	354	N
F013879	Metagenome / Metatranscriptome	267	N
F017997	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10252401	F001272	N/A	ITIKLTQEQANGLLQLIDIAVKAGGIQNAKVALPLVDLIVNAAQPKSE*
Ga0114880_10252404	F017997	AGAAG	VNIIEQIVTALLKWLTGLAKTPPTAEDAKPDKELKAKLLDRIDRAGG*
Ga0114880_10252406	F007260	GGA	LNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVIAGGFQDNIQARILVKFSDWRLADSTLVTVDASVWSCDVGFTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLVTYDGRQMRIMSAKRDGSGAYYALELGAKTK*
Ga0114880_10252407	F013879	GGAG	MTPTVTVDTSRFDAAWKEYIPKTRRSLADAVNSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPIGARRIDKKTGKFLGRSRELRLVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAEVRIVAGNQALINLANQYGLPQENVSMHRGSSAYAYNAKAGFSPSSHVRLNIGLADNQIGNVEAIYAKAMQQAYNDEAREIEMHIAAKLAEAFDGSESKGIVVQ*