Basic Information | |
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Taxon OID | 3300008450 Open in IMG/M |
Scaffold ID | Ga0114880_1025240 Open in IMG/M |
Source Dataset Name | Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2716 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Western Lake Erie | |||||||
Coordinates | Lat. (o) | 41.7032 | Long. (o) | -83.2575 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001272 | Metagenome / Metatranscriptome | 733 | Y |
F007260 | Metagenome / Metatranscriptome | 354 | N |
F013879 | Metagenome / Metatranscriptome | 267 | N |
F017997 | Metagenome / Metatranscriptome | 237 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114880_10252401 | F001272 | N/A | ITIKLTQEQANGLLQLIDIAVKAGGIQNAKVALPLVDLIVNAAQPKSE* |
Ga0114880_10252404 | F017997 | AGAAG | VNIIEQIVTALLKWLTGLAKTPPTAEDAKPDKELKAKLLDRIDRAGG* |
Ga0114880_10252406 | F007260 | GGA | LNLIATSLQLGMSVLQSAMGNPSFLWQGVLVRCLPAAITDANSVIAGGFQDNIQARILVKFSDWRLADSTLVTVDASVWSCDVGFTADRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLVTYDGRQMRIMSAKRDGSGAYYALELGAKTK* |
Ga0114880_10252407 | F013879 | GGAG | MTPTVTVDTSRFDAAWKEYIPKTRRSLADAVNSRTFFLMLRLYILLPPKSPQAARNKILDYFNRPIGARRIDKKTGKFLGRSRELRLVHLIAQAKNAKAGKPGLYGQDMRDAAGKLRRRAAGSVGYLKSAVTKAIKKLSPSFQQFGGTRRAKKGSAEVRIVAGNQALINLANQYGLPQENVSMHRGSSAYAYNAKAGFSPSSHVRLNIGLADNQIGNVEAIYAKAMQQAYNDEAREIEMHIAAKLAEAFDGSESKGIVVQ* |
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