Scaffold Ga0114880_1020093

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1020093
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3121
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F014261	Metagenome	264	Y
F042864	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10200931	F014261	N/A	MKSLIALTFITILGWFAVVTFCGPELYRLINGPEPVKAKVTHRRHR*
Ga0114880_10200932	F042864	N/A	MSTPTKPKATLVSDKAMVELLKRKVTSFRETASLKDKDGYVRGIGSYALYGVDHTRGQIVVLASEPTAGDFNKYVTAKAKAEVCSRYDQVVEYRDAGSHSNPKVTILCWTLA*
Ga0114880_10200933	F003714	N/A	MPNANHPYTDHLTFAGRPIPLKRPMAVYAAVRLQAILPQIAALNAAGKSQADAAAALGTTVCSLRKWIEITGTTWTNLKVRGPYKTKK*
Ga0114880_10200936	F000957	AGGGGG	VSAFKHLDGMVALLSEIYEINERVMCGDICSAKAAIASTKMKKLLNYYHEALHEDGASKVSLQAYVAAGGWVGITYSYEVDGCEIAGSQVPRRV*