Scaffold Ga0114880_1019586

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1019586
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3168
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F015095	Metagenome / Metatranscriptome	257	Y
F023592	Metagenome / Metatranscriptome	209	Y
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10195864	F030767	GAGG	MATYKTKCRLCARITEHIERVVTDNLPPYVKSLQCVKCGVMGIVMMEDVKDA*
Ga0114880_10195865	F029049	GAGG	MVVCRVSRVAKVVLDRSQEITAHRVGLERTITRNAEIQDASNFGQVYKNWHELVWQESEAAAAEIAVANYFGDYGFIPSIDNAHDTADVGENIEVKWTKHTNGHLILQNRGPGRPTDVAILVTGFSPVYHLLGWMPVHMAKQPRYKHPHQNNYWVPRSSLFEMQYLKRSNYGDI*
Ga0114880_10195867	F007029	AGGAG	MGFLDNYEDVNARIKRFRAEFPSGRLVAHIEHIDIIAGTVLVKAEAYREYEDEKPSAVDYAFGNVSTYPNNMKKWFIEDTITSSYGRCIGLLTPSLEFNSRPTVQDMQKVETLPADSDPWSTKASIEDMATMASSILEIGKSLGGELVAEAPRCAHGTMIWAEGTAKATGKPWAAYKCTEKVRANQCNPYWHVLGSDGKWKPQV*
Ga0114880_10195868	F023592	AGG	MNSLDILIGLFAVGMGFMFMVIGYSIGWRQGHGEGFVRGRAIAHALRDKELI*
Ga0114880_10195869	F015095	AGG	MEQAQLVVGIALGSFTILGLGAGLIRHFVKFYLAELKPDGNGGHNLAGRVERIEKRVDRIYELLIEDRLAK*