Scaffold Ga0114880_1016578

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1016578
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3506
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011742	Metagenome	287	N
F042869	Metagenome	157	Y
F086797	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_101657811	F011742	AGG	MTTIEFVPFDWVDDDFNPEIDRIEVDYQWHEADDSVGLISYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIKRNDQEIASERSD*
Ga0114880_10165784	F086797	AGGGGG	MSDSYDDYEAKMQLAERAWEIEEARRTFRTEVWTTKDGREIAIKDMDDKHLFNAYRHSQEELLLREMVLRLFENRIKENT*
Ga0114880_10165789	F042869	AGGAG	MNELIDRNDTIKNHVPIGSIELKLAVARAEGYAIRVEETRYHTADGTFVDESKPKYYYYNDHPLPLLDPYRIAMEFYLKEKA*