Scaffold Ga0114880_1013352

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1013352
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3984
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019140	Metagenome / Metatranscriptome	231	N
F021113	Metagenome / Metatranscriptome	220	Y
F027518	Metagenome / Metatranscriptome	194	N
F039140	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10133522	F027518	N/A	MNAETEIALIHEELQNMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQLILKFL*
Ga0114880_10133523	F039140	N/A	MNEKLKLWVKELVSSSKKVSSKRIIGIFVVINLIAFSYVATFTTYIIPIAMFDTLAILSGGLFGGTVIERFTNQKSNDKTTDSSETNSTGNVQ*
Ga0114880_10133525	F021113	AGGA	MNRNILAAILLFLGTSLLWLVLCWNWWGKKDANNTITEVQKQDSIINYNAGEYQMLLEEQLELQEQIAYYENAQSSAKATYQRTRNSLIVRDTIIRVDVIRLVNSCDSVIASDSLVIDNLKEQLNIEERKIDNLQETVVAYEQKEQLLTEEINSLTADNKKLDKQKKRRNHALIVTTSVAILSTFVLSILL*
Ga0114880_10133526	F019140	N/A	MKNTPLYETLKMTYDREREIVNSIATYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMTKPNEENGREQN*