Scaffold Ga0114880_1010424

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1010424
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4591
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (94.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003212	Metagenome / Metatranscriptome	500	Y
F007691	Metagenome / Metatranscriptome	346	Y
F018135	Metagenome	236	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_101042411	F007691	AGGGGG	METIEQLISEIYEDNYSHLEFDEAMGGESCSCPIHTTLNTIVKYRDGKEGE*
Ga0114880_101042412	F018135	AGGCGG	MTIERVQHSGAVIVSQFIGEGAGEYLFTRTYYGYTIKQAKAQFKIALEGAK*
Ga0114880_10104243	F001477	N/A	MGDSIHPKKSDLILFYEVVEAEGENTWGGADAGQAIQWLTHAPVGSRILVSAWDSDEEDAHLVGQTLDITEIVKAASL*
Ga0114880_10104245	F000821	AGGAGG	VNKEYLEAKVKLCLDQAEIDIQQQEIARAIKNLERANSALSRIFNLKEDENE*
Ga0114880_10104247	F003212	GGAGG	MKDKWLITLEIDTYDGDPAKWNWTDLVGDESKVIESQFKGRVLPTSEGESNE*