Scaffold Ga0114880_1009763

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1009763
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4771
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (78.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042295	Metagenome	158	Y
F073237	Metagenome	120	Y
F085338	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100976310	F085338	GGAG	MTKNDAQKILAEIREGFGDAYTEACAIECLYLTGDLGTHEKLRSSGVDEPLREEGYRARLRQRAIMVARSKE*
Ga0114880_10097634	F073237	GGAG	MNLQDVIWFDTSKGRIGILMVLDWHTETLYYIMGIASGMNDNVDINHIYSGGSYLPDYIGAAFFFGDWE*
Ga0114880_10097639	F042295	GGA	MALNNFSKFNKIEAVDDGPNNHDCFANGCPMAGGISTGGRWVCAYHHQATPDLWPRVTEALRDSEDVRLAINEVMKIDMISWGSAVNGYPPKWQEFAALFDHKPDLQPTEHEKIRKTKYEYRLRNELAINAGLARRKA*