Scaffold Ga0114880

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1008725 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5083
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

5083

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (73.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002009	Metagenome / Metatranscriptome	604	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100872514	F002826	N/A	MQVEAKDRLKWAREILSIARNKLVVERDRATHGHAIDMIQIITMVDAASLVCKEVVEGE*
Ga0114880_10087254	F002009	AGGA	MTAPTIQEMGSAAQEIVWRVMGKGSDKSAYGDWLLKDRPTHDYHIARAIRHLATAQMQLHKSTPCPDNNGETSIDHLERALVRSLFVLAQIRKEVPRL*
Ga0114880_10087256	F003304	AGG	MKQALVTQSFGDEWKKIIDLTRPRMEAYCKRHSIDFILIDKPLTHPAQYSKSAIGNIIATKGYEQVAFVDADVLIANDCPNLGEDAGVFCAFDEGAFLDRKPDMVKLAAAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWFNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDMIQLATSIQYDDAKLAGLGR*
Ga0114880_10087257	F021063	AGG	VRSTHLCRGDYDERLQQLAGEVALQAIRDLRMLRKRGMVKGMKIIKDHQGVPLNDALEYKNSHEVQKLLRDFKSGVIAWWCRASGVQIDNRTLLRKIKENDYVLPT*
Ga0114880_10087258	F022371	AGGA	MFCLLDIAGIVWVISWFLLYSTLTLSAIYCAGYLVFKLIEIIRKELDK*
Ga0114880_10087259	F020665	AGGA	MRKRKAGKNIKLIKTEQCDSVRIMIDIDNDLYEAMADAGKHHLAKDKMACFTYALNKALFELCEEIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114880_1008725

Overview

Ecosystem & Geography

Associated Families

Sequences