Scaffold Ga0114880_1004593

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1004593
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7377
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007579	Metagenome	348	Y
F053986	Metagenome	140	Y
F079819	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10045933	F053986	GGGGG	MSEGTAWNQGELSEETRNLVLESTAMANHTMAMFSLLEEIARPNHAPKKFRDDHLIRGLRNMLIDFQLSGQDDYAECVILAIEGLGGQIKPD*
Ga0114880_10045935	F079819	AGGA	MDHKTYHYEVFLTSLDDGQQCMVQIFRDPENGRVLHSQLAFKNALGSWGVPYQLEKM*
Ga0114880_10045939	F007579	GGAG	MATKAEIDSQIGNATRELAPNTTWKYNPPGDGYYCLEWMDDPALQPTEAATMLKATELANNPTPID*