Scaffold Ga0114880

Basic Information
Taxon OID	3300008450 Open in IMG/M
Scaffold ID	Ga0114880_1003052 Open in IMG/M
Source Dataset Name	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Michigan

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9327
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (19.05%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

9327

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (19.05%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Western Lake Erie
Coordinates	Lat. (^o)	41.7032	Long. (^o)	-83.2575	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Western Lake Erie

Coordinates

Lat. (^o)

41.7032

Long. (^o)

-83.2575

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F010159	Metagenome / Metatranscriptome	307	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100305216	F010159	N/A	MSWSIPTLIEQDIKNGKAQYRTFQTGNGGQSILPVTSNSYVVIFGYDFSPAGGGFRAFSAVDVPTGSALLNTTILRWFETQQIAFYTGTDFYPFIHHVNVNTMLAPKNVNASAPDNENVTAYQLIEEIENTPIARQLYITSTNDVTITHGLILNSNTISANPIPVTNRTPLGLTYGGSAQLVNTQTNYGPGATPQQFMQPSPKDYQDFAFGLLPANADGQAFATPDDTFTNGLVDATAFYGSFFGADFRNSAAAQYYLCLHYALYTETVPEYRG*
Ga0114880_100305217	F000710	N/A	MNISYRQGIRNKGFQVTVPTTGASQTLSLSGLAKAFEGIRFSATTSAAPATLINATQLRITLTINNDVVCDDICAHDLGASTGAGITSGFPYFVPFPRALTGQDTILLRVTNSSGASQILNVTVFYKNEI*
Ga0114880_100305218	F006697	N/A	MANQVQKLAYVDSKLGVSLPGQQTTRVIYDSVNATVGQSYYEFFTNFAGKTEFQTNLTTNKLDSAESMVIKSIQIIMGSSTATIIDHLNLNITVGNQVVLKDFDPSFNATNRGLAFDRLHSGLNDDKNLEVRLLTDIVIPPQVNFKATLQLATGLVAANDDVTIVFKGYGRIFSAGASF*
Ga0114880_100305219	F002259	N/A	MGMSAQDKMITVANRLGLTSLKDMQGTTRMVYDSQGTAALTHTFFKGASQRAFPLTNVGANGNQFQVDEALLVEKIGFFIPTAADGVAYLGLAGVSVKFDLVIGNKTVIKDATVEFGGEQAFYNDGTVGSSVIDLEGVGILIPPQVEYYVVAKPFLSGARTATSVRLGCYLFGTGALLNFNTTI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114880_1003052

Overview

Ecosystem & Geography

Associated Families

Sequences