Scaffold Ga0114880_1002057

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1002057
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11641
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (38.46%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F015723	Metagenome / Metatranscriptome	252	Y
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F082108	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100205713	F024249	N/A	MIFTYNDLKFWLEDADLLPQSYWDALEDYNPDDKNSDEILAKWLGFAHVADFYEYEMQITYVEESYNEDGYTNTTAYPTTSIYRDVPNLETSIYIKWMNWATQVASEE*
Ga0114880_100205719	F025437	N/A	MRPFEIRQLKVSKEQYYARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLMYGDYQHYYKVACCVLEENPMACIDKPDFESLQVELNKLNEVVMELSKYKELYLTLKRTFDEF*
Ga0114880_100205720	F010908	GAGG	MMQILSPFQKYECFAVDGVDYLVIDYTIIQDCDYNLVEWASEMKFKRLKDHKHYTMPISKIITNHQEGRAKLCKCK*
Ga0114880_100205721	F009202	GGAG	MLAGTAMWLAKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDAEQMIYEIQRLQGIIEDQL*
Ga0114880_100205723	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGDEVEYTKNEKGTVKIQRPNSFGGGYTPSASSSAPKGNDERSLSIIRQVALKAAVEYACAAQHDVNTILANAETFNAWMTGASAAPASHTEHFANRNDPF*
Ga0114880_100205725	F009600	N/A	MRLSHTRQLTYKVVVGKVPSLNAFYASKHWTARVKAKELASKEVMSQLAKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDAFKTWGGVKDDSRKYVHSLKLVHDTTIGKDTAEITFSGILVNS*
Ga0114880_10020576	F082108	N/A	MLYIVTPCSRPQNLVRLKQHIPSYATWVVMMDANCDFKGATGASITHYSKRTGNAGHPLRNEFLELYADSFTKEDWVYYLDDDNVLHPKFIEEWSNLHSLDCSIVTWGQVGRLRPTDQPRVGNIDTACYMFKPHDLPNLRFEMTYEADGTFAQAASEQGTLICVEQYLCYYNALK*