Scaffold Ga0114880_1001854

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1001854
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12264
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (68.18%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006891	Metagenome	362	Y
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F031026	Metagenome	183	N
F044969	Metagenome	153	N
F057981	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100185418	F006891	N/A	MSTDQVAELSERLSEVRISIARIETRQSVILDLLERSQASLGEYHGRLTNMERDAHTIKTKLWLVALVSGAVFSTIWELIKRRLSF*
Ga0114880_10018542	F007911	AGG	MPAVTMLDRLVEAALQELLATTVTGVNYHLSHDKTENLPPSIVIKATLGTEEPVQGSGVFSVPVDIIVEDSYDDTTVDAHTQKCSKVLQAFFDSSSLATRLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTYRLAVIAMPNSIAS*
Ga0114880_100185420	F031026	GGA	MLGGRIALLLISAFALCSCATTQTQDGPPPSPDSISYFIYAWDKAERTNPPCPQAYRDLFAESLKALSDSLAETERERARQ*
Ga0114880_10018544	F015449	GAG	MVDSFWGTTNIKVAAAASAFGAKLRQSDPVTCIVEEGGHRKFTFWFSTGDDQDAKAEMERTWADMKSEPEAAIRYVRAALENRETLLGLMKRAEPILSIKRGSQTLLISERASPELKRAMLKKL*
Ga0114880_10018545	F057981	N/A	MSEETLLQELDNSLISPDRYFKDQKLAPYTEGSRLLMLQVRDDSDSAIYFVWSFIYLHILLAEDRKKTIRLAWDKDAFREKLMDWIGEMSEDDRTTASLMCSAILSEANKARVNVIASAIAAPPGNA*
Ga0114880_10018547	F044969	AGG	MSASLTVDASKLQKALKAFIGNTKAEASKEMRIQARMLCVSLANSTQPFGDDNKAKTIGEKAVTRDIDRVYKTGSTAVREIAALPLPRGKTATQNAKQAAAALAGLLGGKGKGKGKQKSKIGEAQNLLDRIRYKPYVNTQIGVFDQGQAHNKARFGRRKSVPKNQFVSQVVTKDSQLTKYFKEKRGNVGIAKSGWAVCAGLLGGFKPIPKWVYRHTGGGRVNDQSGKGLGIVSKPFIQMTNTIPWINAVISTATIQKSIDIQIRKMIKRLGYITAAESKKAGL*