Scaffold Ga0114880_1001511

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1001511
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13689
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000763	Metagenome / Metatranscriptome	901	Y
F050367	Metagenome	145	Y
F077034	Metagenome	117	Y
F079678	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100151110	F000763	AGGAG	MNMKNPIVLTAGAFLSAWAASNFDVDYRAILWAVLAGVFGYATPKK*
Ga0114880_10015112	F077034	AGGA	MGEMVIFSDGEATVMGGEFDEPQEIVIYCDLCNEPLAISPVAADEVFLQCLRCHAVNGKPTSQA*
Ga0114880_100151120	F079678	GAGG	MASIVTVAELRSILGVSVALYSDSYLTDVIDTSEAVILPMLVKYATAVDKVSLTDNVATYHTTNIHEFSEGQSVVVTGCGSPFSATVTVKADPDAYSFSADITNADILERNVIPSGLATLSGAATYVGVSAVESAVLAVAVEVFQSRIAPGGQIEGVDFTSVSPYRLGRSLFNRVSGLLGQYLDVETMVQ*
Ga0114880_10015116	F050367	GGAG	MTINSLTILTIIGVCMAIYFAYRLGEEVGHDRGIVEGRKALRKQFEQVGR*