Scaffold Ga0114880_1001343

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1001343
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14747
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (77.27%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008616	Metagenome / Metatranscriptome	330	Y
F008811	Metagenome / Metatranscriptome	327	N
F011755	Metagenome	287	Y
F013987	Metagenome	266	Y
F014609	Metagenome	261	Y
F018353	Metagenome	235	N
F023328	Metagenome	210	N
F028786	Metagenome / Metatranscriptome	190	N
F030061	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_10013431	F013987	AGGAG	MIKEEKHRILPALDRAHEEALRQGIITELDAAGMAMAYTLAGVLDGGTLKPIEEVKYMGQLQQILDKYGLSLFGRKEKPELEAGDDPLERIRTFNPETTDHTSPNKPN*
Ga0114880_100134311	F023328	AGG	MTVYTPTYRVTIAGTVQTSTTLEDATITYGRNDFFEATQPSYCNLELLNLDGTSPVVNLLDTVILEVTDSTGAYVKLFTGEVSGVYNRFEAAGLGGKPNTLQIQAIGALGLLVKRYAGSVAYPEELDGARIQRILEETLFTAWEDLSNTITWNDFTTETWANYGVQGIDTIDAGRYEVLARTASIDQAYNLTDVTQQSGLGYLYDTTDFKIGYADAERRSENYTTNLIELDANLVNADIQTRLQTADIVNSVVIQYDDPVLEVAAQNDTSINNYGLLEEVRPTILAQLTDATEQATNFVNYRGTPKASLEEVTVNLANSNMTNSVRDNLLSVSMDTLLYLDNIPVGLIPEGSFEGFVEGWTWTLGRNNLELAMSVSNSIYSTLDVQWEDYNASIQWQNLANDYRWLDVI*
Ga0114880_100134314	F028786	AGG	MKKSTQYFNHKAALMGAIAFLAAWQATDFALDYRAVLGAVVAASMGAMNPNAKTKVK*
Ga0114880_100134316	F018353	AGG	MNKPKAKKQTIELPDVMASELVRIINTAHEDGKLITGFVCCLEVFDGKKKTIKIAANADMPQHAVFGIINFAAEKYQFSIAPDEDDDDDFYDPEWFNGQ*
Ga0114880_100134317	F014609	N/A	MINELIAITGLLITVLVLVIKATTEITKMKSQLFPNGGSSLADKVTRLQVEVSKISTTMDSISAELGKPKRKR*
Ga0114880_100134321	F011755	N/A	MTTIYLHYHYDYDNSKEWLCKDAKCYQKRLEDKKKLEAYQDMVDRDLQRKENLQLIEDYIQDPRIDNYNDY*
Ga0114880_10013436	F030061	AGTAGG	MALSTLRAELKTAITDNTKYSAYDHVPEVIIPPSVLILASDPYLEPIVIGNNKNWNVRLTLEVVGTVYSNPSALTNLEDDIEAICALIPTKWSILSVSSPRIRATNSTDLLSSEIQITTVYTG*
Ga0114880_10013437	F008811	AGG	MATTVLSGRQLAISVGGKTYSEQILSSAMNFDTERLTFDTLAGKAYKYIDSNVTLDIEFLNDAAASPNSLYGDLWTATETAPDTALAFVMTLKTGVTLTGTVLPQYPPVSASGADAQTCSVSLQVVGIPTEDLTA*
Ga0114880_10013438	F008616	AGG	MLKLQISWELETGEKFDEWTRPIELAMAEKELYNNKSIIKVLMEDSTPSNSLLLFLGHKIQQRVTKKIENFETWKSKVVSITASDFETANFTKPEASGE*