Scaffold Ga0114880_1000842

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1000842
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18956
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F008619	Metagenome	330	Y
F014737	Metagenome / Metatranscriptome	260	Y
F023109	Metagenome / Metatranscriptome	211	Y
F043944	Metagenome	155	Y
F054875	Metagenome	139	Y
F073561	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100084210	F054875	AGGA	MTKFSAAFGDKYQTNKRNMLTRSFELGGHTFKVRIPLMVESDAIYKKVSQPDEETVEKVYQEITKPLRQFENNQSEEFQFTNDDILVEGRSMREAAKNKAITEARITEFFKLLIPEMEGVTFEDLTYADIEEEFPISVQMQIVEKIGEVISPTYREARGN*
Ga0114880_100084217	F002997	N/A	MAIARFEQITVKNLSFGKSDFGEQSTTQTEWFKTRARVQSVANSLKISEKYRLYQDVVNFVLNYTPNTRTMVRNQNLYSINYNGYDWRIDNIRESDDRMNVVILAYRSDPVTAV*
Ga0114880_10008422	F073561	GGA	MALFSKNVITQVSGFDNPLITGELVYNQRWYWNLTILDSAGLPVNLSTATVTADIARRQISNLIDTRNGLSFDVSNYTPVPTAINLTISNKVNAAGSFTLVIDDTAWGLIASDPQLKIDENNPVCFTGKIKIAFAANTPTPAEDNIIFLMFLVRSDGVTVL*
Ga0114880_10008425	F023109	N/A	MIRQATRYDIPRLLEIVEAYAYENPIKKLGEPCNHFPRYVEELLFSIIKGRGFIFVDTHMRGAIVAYKTSNIWSPKVKELNELLWWVEPEHRNGTIGGRLWKAFDERAKEMLKAGEVDFVCTSISANGPLIDYTRRGYKALGATFVRE*
Ga0114880_10008426	F014737	GGA	MTTINAVTGSQINHAEFVKLTVGNAGTIYTFCNAAAPITVSGITFSNLGALLSVGDVQRDIKATSDDLTISLTGIASANISLILSSDIKGSLVEVWRGFFDANNQIITTPTTQFFKRYQGIINSVAITEDFNTEMRTRIATCSISCSSMRRVLENRLSGIKTNQNSWQFIYAGDTSMNRVSEISNTFFDFGSPPKTNTQASETTVTQTNGYEA*
Ga0114880_10008427	F008619	AGGGGG	MSFQTIFDIQQSMTVNNRRMVGQQVARSGYITVAQYLTAVPWVFTIQPHSYLYYPQVRDIIQTIDNKDRQLPEQISFASTNLQWFVKMRGTATAATLNGAPAANTQTLALNSNGTFKAGDFIMVGGYVYKVTADSAGSSVGIHRPLIGTPTSGTTVFLGTACTFNVVAESCPTYTLNPMTDGAFVQWDSAFVFREYIT*
Ga0114880_10008429	F043944	N/A	MIFNGHTLETIEELDDVTLANIQTMYADGMVGNFGILTQIATLTNGVFNYMRVANSPPYKLANILGSAYDYIYPPLSDEHKKAAVNDSLLAFMQQAQGFDKTLFGVKDG*