Scaffold Ga0114880_1000528

Overview

Basic Information

• Taxon OID: 3300008450
• Scaffold ID: Ga0114880_1000528
• Source Dataset Name: Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23839
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (16.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Viral Communities During Cyanobacterial Harmful Algal Blooms (Chabs) In Western Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Western Lake Erie
• Coordinates
  • Lat. (^o): 41.7032
  • Long. (^o): -83.2575

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031091	Metagenome / Metatranscriptome	183	Y
F032541	Metagenome / Metatranscriptome	179	Y
F061656	Metagenome / Metatranscriptome	131	Y
F061834	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114880_100052823	F032541	N/A	MTLLNEIKQILSEVTKVNFKGHKFVLKIDVNEDPNKKGVKVQFLPTTFTGMSKKEQDDIAMELQQKLNQGLSPLGLAVERDRELKDKTIIGFFIYIEYLNKIIINALSQAAKG*
Ga0114880_100052824	F061656	N/A	MPQFCFYSKNNPTQEPVGVIYAASKEEAIKFFSLTKQLPVNDFLTIFEVKNYTYEESNQAGDKQLLKG*
Ga0114880_100052825	F061834	GGA	MEKKLFVQSILLLQEIEDRRDFMESELGVDMTIYEEKFLQVIENLFKIHFSKEQLALIQYYIYQVPTLDNWDGKIDLSDGKEMITVDFETPEQVWSVISSLKKQKK*
Ga0114880_100052832	F031091	N/A	MEKLISKFTCPITGIITTYTYRGKSIASGIEKAEFDYPKEYLEEFAKKEKYQKNLPKTKQMFLNPKTGKEVSYYRAKILGLVK*